High Protein Bagel Bites for a Healthy Snack

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How to make delicious high protein bagel bites with Greek yogurt and cheese. Perfect healthy snack with simple ingredients and meal prep friendly.

james carter jr for recipes by clare
By James Carter Jr
Updated on Mon, 16 Feb 2026 09:46:23 GMT
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These high protein bagel bites are my go-to snack when I need something satisfying that actually keeps me full. Made with Greek yogurt and cheese, they pack serious protein into every bite without feeling heavy or overly indulgent.

I started making these bagel bites when I got tired of reaching for chips or crackers that left me hungry an hour later. The first time I pulled a batch from the oven, the smell of toasted cheese and garlic filled my kitchen, and I knew I’d found something special. They’re tender on the inside with slightly crispy edges, and the best part is how simple they come together. No yeast, no rising time, just mix and bake. Whether you need a post-workout snack or something to grab between meetings, these high protein bagel bites deliver on flavor and nutrition. They’re also fantastic for meal prep since they store beautifully and reheat in minutes.

What You’ll Need for These Protein-Packed Bites

I always use full-fat Greek yogurt for the richest texture, but low-fat works if that’s what you have on hand. The self-rising flour is key here since it eliminates the need for separate leavening agents. Pro tip: measure your flour by spooning it into the cup rather than scooping directly to avoid dense bagel bites.

  • 1 cup Greek yogurt (full-fat for best results)
  • 1 cup self-rising flour
  • 1 egg
  • 1/2 cup shredded cheese (I prefer sharp cheddar for extra flavor, but mozzarella makes them milder)
  • 1/2 teaspoon salt
  • 1/2 teaspoon garlic powder
  • Optional toppings: Everything bagel seasoning, sesame seeds, poppy seeds
High protein bagel bites arranged on white plate with everything bagel seasoning topping

How to Make Your Bagel Bites Step by Step

I recommend mixing this dough by hand rather than using a stand mixer since it comes together quickly and you want to avoid overworking it.

Step 1: Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper. Position the rack in the center of the oven for even baking. Make sure your oven is fully heated before baking to ensure even browning.

Step 2: In a mixing bowl, combine the Greek yogurt, self-rising flour, egg, shredded cheese, salt, and garlic powder. Stir with a wooden spoon or spatula until a shaggy dough forms, about 1-2 minutes. The dough should pull away from the bowl sides but still feel slightly tacky to the touch, similar to playdough consistency.

Step 3: If your dough feels too wet or sticky to handle, add flour one tablespoon at a time until manageable. Don’t add too much or your high protein bagel bites will turn out dry.

Step 4: Divide the dough into 8-10 equal portions. I like to use a kitchen scale for consistency, aiming for about 2 ounces per portion. Roll each piece between your palms into a smooth ball.

Step 5: Arrange the dough balls on your prepared baking sheet, spacing them about 2 inches apart. They’ll puff slightly but won’t spread much.

Step 6: If using toppings, lightly brush the tops with water using a pastry brush or your fingertip, then sprinkle with everything bagel seasoning, sesame seeds, or poppy seeds. The water helps the toppings stick during baking.

Step 7: Bake for 18-20 minutes until the bagel bites turn golden brown on top and feel firm when gently pressed. For extra crispiness, switch to broil for the final 1-2 minutes, watching carefully to prevent burning.

Step 8: Let cool on the baking sheet for 5 minutes before transferring to a wire rack. This resting time allows the structure to set properly. They’ll firm up slightly as they cool and develop the perfect chewy texture.

Perfect Pairings for Your Protein Bites

These high protein bagel bites taste amazing on their own, but pairing them with the right accompaniments takes them to the next level.

Whipped Cream Cheese: The tangy richness balances the savory garlic and cheese flavors while adding extra protein and satisfying creaminess.

Hummus: A scoop of roasted red pepper or classic hummus adds plant-based protein and Mediterranean flair, plus the smooth texture contrasts nicely with the bagel bite’s chewiness.

Avocado Slices: Fresh avocado brings healthy fats and a buttery taste that complements the sharpness of the cheese while keeping things light and nutritious.

Turkey and Cheese: Layer thin-sliced turkey and a slice of cheese on top for a mini sandwich situation that turns your snack into a more substantial meal.

Everything Bagel Dip: Mix cream cheese with Greek yogurt and everything bagel seasoning for a meta pairing that doubles down on those classic bagel flavors.

More High-Protein Recipes to Power Your Day

These high protein bagel bites are perfect for snacking, but when hunger strikes for something more substantial, there are plenty of protein-packed options to explore. For a savory breakfast twist, the Everything Bagel Cottage Cheese Bites deliver similar bagel flavors with even more protein, while the Cheddar Bacon Everything Bagel takes things up a notch with crispy bacon and sharp cheddar.

When you need a full meal that still keeps protein front and center, the High Protein Chicken Ranch Quesadilla and Cottage Cheese Chicken Parm Bowl both deliver satisfying portions without the heavy feeling. For something lighter but equally protein-rich, the High Protein Egg White Bites make excellent grab-and-go options alongside these bagel bites for meal prep success.

Keeping Your Bagel Bites Fresh

Store your high protein bagel bites in an airtight container in the refrigerator for up to 4 days. I recommend placing parchment paper between layers if you’re stacking them to prevent sticking.

For longer storage, arrange cooled bagel bites in a single layer on a baking sheet and freeze for 1-2 hours, then transfer to a freezer-safe bag or container for up to 3 months. This flash-freezing method prevents them from sticking together.

Reheat refrigerated bagel bites in a 350°F oven or toaster oven for 5-7 minutes until warmed through. From frozen, reheat for 10-12 minutes in a 350°F oven until heated through and slightly crispy on the outside. Pro tip: avoid the microwave if possible since it makes them rubbery. The oven keeps that slightly crispy exterior intact.

Your Bagel Bite Questions Answered

Can I make these high protein bagel bites without self-rising flour?

Yes! Mix 1 cup all-purpose flour with 1 1/2 teaspoons baking powder and 1/4 teaspoon salt as a substitute.

Why is my dough too sticky to work with?

Greek yogurt brands vary in moisture content. Add flour one tablespoon at a time until the dough is tacky but manageable. Lightly flouring your hands also helps when shaping.

Can I add protein powder to boost the protein even more?

You can replace up to 1/4 cup of the flour with unflavored protein powder, but this may make the texture slightly denser. Stick with whey or casein for best results.

How do I make these dairy-free?

Use plant-based Greek yogurt and dairy-free cheese. Replace the egg with a flax egg (1 tablespoon ground flaxseed mixed with 3 tablespoons water, let sit 5 minutes).

Enjoy Your Homemade Protein Snack

Making your own high protein bagel bites at home is easier than you might think and so much more rewarding than store-bought options. You control the ingredients, the flavor, and the portion size, all while getting a snack that actually satisfies. Whether you’re prepping for busy weekdays or just want something delicious on hand, this recipe delivers every time. Try this recipe and discover your new favorite protein-packed snack!

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High Protein Bagel Bites for a Healthy Snack

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Delicious high protein bagel bites made with Greek yogurt and cheese. Perfect healthy snack that’s easy to make.

  • Author: James Carter Jr
  • Prep Time: 5 minutes
  • Cook Time: 20 minutes
  • Total Time: 25 minutes
  • Yield: 810 bagel bites 1x
  • Category: Snack
  • Method: Bake
  • Cuisine: American

Ingredients

Scale
  • 1 cup Greek yogurt (full-fat for best results)
  • 1 cup self-rising flour
  • 1 egg
  • 1/2 cup shredded cheese (cheddar or mozzarella)
  • 1/2 teaspoon salt
  • 1/2 teaspoon garlic powder
  • Optional toppings: Everything bagel seasoning, sesame seeds, poppy seeds

Instructions

  1. Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper. Position the rack in the center of the oven.
  2. In a mixing bowl, combine the Greek yogurt, self-rising flour, egg, shredded cheese, salt, and garlic powder. Mix until a dough forms, about 1-2 minutes. If the dough is too sticky, add flour one tablespoon at a time.
  3. Divide the dough into 8-10 equal portions and roll each into a small ball.
  4. Place the dough balls on the prepared baking sheet, spacing them about 2 inches apart. If using toppings, brush the tops with a little water and sprinkle with your choice of toppings.
  5. Bake for 18-20 minutes, or until golden brown and firm when gently pressed.
  6. Let cool on the baking sheet for 5 minutes before transferring to a wire rack. For extra crispiness, broil for the last 1-2 minutes of baking.

Notes

  • Use full-fat Greek yogurt for the best texture and richness. Low-fat works but may be slightly less tender.
  • Measure flour by spooning into the cup rather than scooping to avoid dense bagel bites.
  • For a vegan version, use plant-based yogurt, dairy-free cheese, and a flax egg (1 tablespoon ground flaxseed mixed with 3 tablespoons water, let sit 5 minutes).
  • These bagel bites freeze beautifully. Flash-freeze on a baking sheet, then store in a freezer bag for up to 3 months.

Nutrition

  • Serving Size: 2-3 bagel bites
  • Calories: 180 kcal
  • Sugar: 2 g
  • Sodium: 420 mg
  • Fat: 7 g
  • Saturated Fat: 4 g
  • Unsaturated Fat: 3 g
  • Trans Fat: 0 g
  • Carbohydrates: 18 g
  • Fiber: 1 g
  • Protein: 10 g
  • Cholesterol: 55 mg

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